Import Package and Initialize Kinex#

  1. Import Kinex

from kinex import Kinex

  1. Create a Kinex Object

  • With Predefined Matrices:

It will look in the resources to find the matrices. If it doesn’t find them, it will download them and save them for future use.

kinex = Kinex()

  • With Your Custom Matrices:

scoring_matrix_ser_thr = pd.read_csv("path/to/scoring_matrix_ser_thr.csv")
scoring_matrix_tyr = pd.read_csv("path/to/scoring_matrix_tyr.csv")

kinex = Kinex(scoring_matrix_ser_thr, scoring_matrix_tyr)

Note

The matrix looks like this:

              AAK1    ACVR2A  ...      YSK4       ZAK
0     -11.147481 -6.325340  ... -6.723077 -7.402360
1     -10.421859 -6.178601  ... -6.343452 -7.373478
...          ...       ...  ...
82753   8.074270  7.289390  ...  4.525527  4.837377
82754   8.623180  7.871226  ...  4.869195  5.062391

Note

Predefined matrices can be found here: